In this tutorial, we perform an advanced single-cell RNA-seq analysis workflow using Scanpy on the PBMC-3k benchmark dataset. We start by loading the dataset, inspecting its structure, and applying ...

In this tutorial, we build a complete pipeline for single-cell RNA sequencing analysis using Scanpy. We start by installing the required libraries and loading the PBMC 3k dataset, then perform quality ...

Hematopoietic stem cells (HSCs) sustain lifelong hematopoiesis through their capacity for self-renewal and multilineage differentiation. However, the isolation and functional characterization of HSCs ...

Single-cell technologies have revolutionized our ability to interrogate biological systems at unprecedented resolution, revealing complex cellular heterogeneity and dynamic processes that underlie ...

Note This implementation is no longer maintained. A new version in Jax is available in pertpy. For more information and contribution guidelines please visit the ...

This study presents a useful finding for the ferroptosis-mediated tumor microenvironment (TME) in triple-negative breast cancer (TNBC) using public single-cell RNA sequencing (scRNA-seq) and bulk RNA ...

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